PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00115.1.g00930.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 282aa    MW: 31037.8 Da    PI: 9.4084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00115.1.g00930.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19133183256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Zjn_sc00115.1.g00930.1.am.mk 133 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARSIRGA 183
                                   69*******.**********75....44*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-36133196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-32133191IPR001471AP2/ERF domain
CDDcd000183.57E-19133192No hitNo description
PROSITE profilePS5103224.21133190IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22133191IPR016177DNA-binding domain
PfamPF008471.9E-12134182IPR001471AP2/ERF domain
PRINTSPR003676.3E-11134145IPR001471AP2/ERF domain
PRINTSPR003676.3E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRSSSRAPGL VCHPLQPNHR SSTGPGPGAH NFNLYKLHTQ TVGRRYCPTP IQRPQKSTHP  60
LFPFQSATEQ NTTRSLEESM CGGAIIYDYI PARRRVSSAD FWPDDSDESD HHHHHTAERA  120
AARPKARRER KNQYRGIRQR PWGKWAAEIR DPVKGVRVWL GTYPTAEAAA RAYDRAARSI  180
RGAKAKVNFP NDVAAPKAAP AAAAAPPAPA PKVEPSDEVK ELSEVLMAYE NYMNFLGIPY  240
MEGGNAAAPA AAAVEEPSAP APVSGLWSFE DYYQPSLALF TE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21132193163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-21133193566ATERF1
3gcc_A4e-21133193566ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353272e-74BT035327.1 Zea mays full-length cDNA clone ZM_BFb0055H11 mRNA, complete cds.
GenBankJX4699152e-74JX469915.1 Zea mays subsp. mays clone UT3171 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.16e-81putative AP2/EREBP transcription factor superfamily protein
TrEMBLB4FDY96e-81B4FDY9_MAIZE; Uncharacterized protein
TrEMBLK4JRM46e-81K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G169382_P012e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-30ERF family protein