PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00097.1.g00780.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 710aa    MW: 74948 Da    PI: 9.4615
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00097.1.g00780.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1233.4e-38265387289
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eae 76 
                                   +++k++++++hTkv+gR+RR+R++ +caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++         
  Zjn_sc00097.1.g00780.1.am.mk 265 TVAKRPSKDRHTKVDGRGRRIRMPTLCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStlnlpmR-- 343
                                   5789************************************************************999998885433221.. PP

                           TCP  77 sssssasnsssg..................................k 89 
                                        a+++s++                                  +
  Zjn_sc00097.1.g00780.1.am.mk 344 ---AGAGANSARaapfqalalhphqqhdmsammgyhhllppqqqepS 387
                                   ...22222222212222233333333333323333222222222210 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.536271325IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-35271404IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MEGARGGRPP TVATVVVSFG SHGFGCRGGA RLRKMGLRRA PQETEPCSRR EGREEIRLPR  60
KTKLSNPTRP HFPVPVPDAE SPSLSLSSPL RSLAWLRSVL PAPPRAAFPH LRARHVLLLH  120
PTPVTAATPR HAAPGGQRRR LSISVRVVTE REGPFAGRRS ARGQTMDHGG GGGGGGGGAP  180
SSSNSGGTSG GRGSEQHPPH AFYYTGPAPV PAGSNSGAPP PPPQQSPFAG ALAITPAAGV  240
AEQSQAQAST AAGDKKAVVP AAAGTVAKRP SKDRHTKVDG RGRRIRMPTL CAARVFQLTR  300
ELGHKSDGET IEWLLQQAEP AIVAATGTGT IPANFSTLNL PMRAGAGANS ARAAPFQALA  360
LHPHQQHDMS AMMGYHHLLP PQQQEPSPQD SNPSASYMRK RYREDLFKED DDDDRQDPSA  420
PKAREQHHQQ QAASSTPQAP SAAMWAMAPN TAAPGAGAFW MVPVSATSAA AARPAEPQPM  480
WSFGAGSGAV QAPLQFMSRA TYPPGGTGGS GVSDTNLGVF GAAHPYNRGA SADQQQTQTE  540
QQGGGDRGAE DEEEGDDDSG EEDNGNNNGN GSGSQQASLQ ETKPLPMEED HYEDDRVGQL  600
RALMTANGAE KPETREDNIN FYYSTPPPGL PEEHPQGTAL RRAPGPPRPL ADEAPGEPQS  660
GHHLGLPFLR DPPPRPPLTT RSARRRCPPP SRRASRRPQP EEHEPGSAPL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836911e-105BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds.
GenBankKJ7269511e-105KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808168.11e-113transcription factor PCF3-like
TrEMBLA0A3L6T4N81e-122A0A3L6T4N8_PANMI; Transcription factor PCF3-like isoform X2
STRINGGRMZM2G089638_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.12e-40TCP family protein