PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g03010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 350aa    MW: 37231.6 Da    PI: 8.7489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g03010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.3e-15178211134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplW +gp g+k+LCnaCG+++rk +
  Zjn_sc00069.1.g03010.1.am.mk 178 CSDCNTTKTPLWTSGPCGPKSLCNACGIRQRKAR 211
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-13172224IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-10172211No hitNo description
PROSITE profilePS5011411.253176208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-12176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.89E-13177214No hitNo description
PfamPF003201.5E-13178211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSAIYMSQLS TALPLMEGDH HHQGHFQDFT LPKDPPILFP FMIGSSSSGD SGLSYGSPDH  60
HLMSQQQAML EPRHMIGGSS AAFVFTAPFP TVESIRDRDD MIEPSSYDPY DMGKLHIGGG  120
PIEAAGAGNW TPPAKMRITR KASADPGAGG MAVKKPRRRA QAYEDMSSPT NLGVIRVCSD  180
CNTTKTPLWT SGPCGPKSLC NACGIRQRKA RRAMTSAGAV SAESVRAATA TSSDAAAMAV  240
HLKVKKEKRA HVDRSLPFKK RCKVVQDHAA VPVAPVRAAD KTAAEVADSA LSGGLVENIE  300
LISWSRPSPS QPATTACRSF LPAPALPVQH DEITDAAMLL MTLSCGLVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336792e-44BT033679.1 Zea mays full-length cDNA clone ZM_BFc0123C20 mRNA, complete cds.
GenBankBT0645952e-44BT064595.1 Zea mays full-length cDNA clone ZM_BFc0188D02 mRNA, complete cds.
GenBankEU9555552e-44EU955555.1 Zea mays clone 1536888 GATA transcription factor 20 mRNA, complete cds.
GenBankKJ7280512e-44KJ728051.1 Zea mays clone pUT6197 C2C2-GATA transcription factor (GATA29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.11e-147putative GATA transcription factor 22
SwissprotQ6YW488e-74CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VZ481e-155A0A1E5VZ48_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]