PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00068.1.g03390.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 292aa    MW: 32351.9 Da    PI: 4.6884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00068.1.g03390.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.8e-11150192754
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   ++ErrRR+r+N++++ Lr+++Pk +      K++  ++L  +++Y+k+L
  Zjn_sc00068.1.g03390.1.sm.mk 150 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSMLGDTIDYMKEL 192
                                   79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.11E-4136197No hitNo description
PROSITE profilePS5088815.091143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-15147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-12149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8150192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-15150209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.29E-4244282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW DCNDAVGDFF FTAAPAMESD CSFQEHHQPP NSLSVLPTFT  60
ASYDHRKPPP APGFDCLSDD VYGASTFGGP NAGDYGGEMG FLHVIEPKAP LTEGTGLGIC  120
KVEPGLPDSK PPAPLSKKKR MDGMPSKNLM AERRRRKRLN DRLSMLRSVV PKISKMDRTS  180
MLGDTIDYMK ELLERIKQLQ EEMDLQEQQE APGVLSVFRE LNPNEMVARN TPKFEVERKE  240
GGETMVEICC AAKPGLLMST VSTLDTLGLD IQQAVVSCFN DFGMHASCSK PD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137157KKRMDGMPSKNLMAERRRRKR
2151158ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998891e-169FP099889.1 Phyllostachys edulis cDNA clone: bphyst008e05, full insert sequence.
GenBankFP1006431e-169FP100643.1 Phyllostachys edulis cDNA clone: bphyst017o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-137uncharacterized LOC100274388
SwissprotQ9LSL12e-54BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3L6S1271e-139A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2
STRINGSb10g030470.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-53beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]