PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g01470.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 110aa    MW: 12302.5 Da    PI: 4.313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g01470.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-05871033955
                                   TCHHHHHHHHHHHHHHH CS
                           HLH  39 sKaeiLekAveYIksLq 55 
                                   +Ka++Le A+eY+k+Lq
  Zjn_sc00066.1.g01470.1.sm.mk  87 DKASMLEDAIEYLKQLQ 103
                                   8***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-486107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MDGQQLDLIM RHKSMANICE SEDALGSSES EHARPARPRG KRSRAAEVHN LSEKEMLIDP  60
DAHEIGAEEE EQDKREDEGA ADAFLTDKAS MLEDAIEYLK QLQLQVQGPN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577732e-54EU957773.1 Zea mays clone 1615677 mRNA sequence.
GenBankBT0370692e-54BT037069.1 Zea mays full-length cDNA clone ZM_BFb0153L05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954276.12e-34PREDICTED: transcription factor SPATULA
TrEMBLA0A0A9CVL01e-35A0A0A9CVL0_ARUDO; Uncharacterized protein
TrEMBLK3YUQ73e-35K3YUQ7_SETIT; Uncharacterized protein
STRINGSi017762m6e-34(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-09bHLH family protein