PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g00230.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 352aa    MW: 37273.3 Da    PI: 10.7302
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g00230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.13.6e-3977173395
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 
                                   ++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++as++  +++s+sss
  Zjn_sc00066.1.g00230.1.am.mk  77 VRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIVAATGTGTTPASFSttSPSSRSSS 157
                                   689************************************************************999998888888888888 PP

                           TCP  82 asnsssg..kaaksaa 95 
                                   +++++++  +aa++++
  Zjn_sc00066.1.g00230.1.am.mk 158 QQAPQIQlpSAAPAHH 173
                                   8888887553333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3382161IPR005333Transcription factor, TCP
PROSITE profilePS5136927.83882136IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPAQLTGRTG SNGSRAGGRS DPIRSGMLPA ARVSVSPPFP TRPHQVSQDR APMTTRPADG  60
GGGDKQLVPA SNNAHGVRKA PSKDRHSKVD GRGRRIRMPI ICAARVFQLT RELGHKSDGQ  120
TIEWLLRQAE PSIVAATGTG TTPASFSTTS PSSRSSSQQA PQIQLPSAAP AHHVLPHAAA  180
AAAPFILGKR VRGANDDTEV TAVGPAAGFW ALPARADFGQ LWSFAAAPDM MVAAVPEEAS  240
AARYLPVAQA QGNLNLLASF SGGPAGNGAT AARAEEESAH EFFCRSLIVL YVSLAFTHVN  300
QERDWMEPLL LAVLFPIPAS KKRLRKNPHS FTPFYCTHGA VNHVCNCTIR PP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407981e-100AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047761e-100AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149581e-100AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-100CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185649.12e-79transcription factor TCP21-like
RefseqXP_025814152.16e-80transcription factor TCP7-like
SwissprotQ9FMX28e-64TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0A9JXS12e-82A0A0A9JXS1_ARUDO; Uncharacterized protein
STRINGOMERI02G35320.14e-76(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-46TCP family protein