PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00063.1.g00830.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 569aa    MW: 59966.6 Da    PI: 8.173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00063.1.g00830.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-054805171254
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Zjn_sc00063.1.g00830.1.am.mk 480 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 517
                                   677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-5478521No hitNo description
SuperFamilySSF474594.06E-10478526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-8482522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGFGLVREAQ RLLTRTFCQS HHGTLADFAR RVRGSCVYAR TRECADRFFQ AREHRRPGQG  60
PRGASDVTRL APVASPVAKA ISSSSPRHAA GLLLSSLDEN TSSGPDRDPG DPKLIKLDPI  120
PTCPPYRIAS QPSTSTPHSL PATDLGRMPS PPSVVDANAT TPANSTTKAG SYRASYIGRD  180
MADHQEMIHA AAAAAATGTS SHGHGVDWWS AAVSCSPAGW SAPADGNSSR SGNAASSESP  240
RSSSFAAGVS SVTFQEPAGV IQRPAAVAVP QPVAGTFTGA WSQPYYLDGS DFHGYMSARN  300
DQGHMNAPSL TSPSSSNNPM MAQEPHDPNH QFLSNLGLEL LSSPTSSSGG FRSSSLLRSL  360
TEPAASAKPL AGFQQYHLQQ QTMMNQAPGS VREALQFSNN TPFWNPALGF SAPEAAESLG  420
TASQSLAQSR PASSLEDKSA LEVAGDSSSN IAKKANTDPT PRIKKARTGT PSPLPTFKVR  480
KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHEQ VGMSTDSSEA ATMGDLSGRG  540
LCLVPISSTF AVASETPVDF WTPFGAAFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612832e-54BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972712.11e-166transcription factor bHLH112
TrEMBLA0A368RHX51e-165A0A368RHX5_SETIT; Uncharacterized protein
TrEMBLA0A3L6PM301e-165A0A3L6PM30_PANMI; Uncharacterized protein
STRINGPavir.Fa02016.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.18e-39bHLH family protein