PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00061.1.g01420.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 594aa    MW: 63620.6 Da    PI: 9.5607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00061.1.g01420.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09422469455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++++P +    sk   Ka +L + ++Y++sLq
  Zjn_sc00061.1.g01420.1.am.mk 422 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 469
                                   8*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16416486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.86E-11416473No hitNo description
Gene3DG3DSA:4.10.280.101.9E-16418486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523418468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6422469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10424474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MDLKQTAVIL SYAATHCLST AIGWAVTDIE MARGFIGSSV HATIWSLLPR APNATTIMWL  60
SEAPNADRFS VAFGWVSRAQ SFEWTVQEAD ASWVVSAIKI RTYRTWGVER PSKARPLIPH  120
LDAHFPPPPS SRRQARTHAL ARAHTYPARS SRTRPGHQPP ASRPRLWQRS AMAHDGFPGA  180
FNELPWPLTQ AAAAAGAPVD ALQAQLPYPL AGAEWEHDAA MSSLVPSPAS TVGGAGVHEA  240
VLMEHLASRL GVSMPSPPLP SPSSRYASCY STPVGSPSKP MNAAANVGFA ERAARLPCFA  300
ASNGKLSRVA SSQSLLAEQT SSPRGVAPAH GSSSDGPNRK RKAAAGGKSK AKDTMTTATA  360
KSPEAERRTK KSKLSADVGD DDEPRPAAGE AGHGNDKGKE LVAEPPKDYI HVRARRGQAT  420
DSHSLAERVR REKISERMKL LQDIVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLS  480
TVNPRLEFDV DSFVQKDANQ SCVPAPTSLP QPPPPVYSTE GSNTAFCYTS SPAPAVPSPV  540
TANAKSFEPS SLVSHGSIQD HSLEGFENSN PHQIASPWVD DLQSLVQMGF RGNT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.11e-155transcription factor BHLH089-like
TrEMBLA0A3L6Q2U41e-165A0A3L6Q2U4_PANMI; Transcription factor bHLH62-like
STRINGPavir.Ha00788.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-60bHLH family protein