PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g04020.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 311aa    MW: 33444.3 Da    PI: 6.3069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g04020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20158208255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp +ng  +r++lg+++tae+Aa a+++a+ +++g
  Zjn_sc00056.1.g04020.1.am.mk 158 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 208
                                   8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.71E-29157216No hitNo description
Gene3DG3DSA:3.30.730.105.2E-32157216IPR001471AP2/ERF domain
PROSITE profilePS5103224.25158216IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-23158218IPR016177DNA-binding domain
SMARTSM003802.2E-38158222IPR001471AP2/ERF domain
PfamPF008472.7E-14158208IPR001471AP2/ERF domain
PRINTSPR003671.1E-10159170IPR001471AP2/ERF domain
PRINTSPR003671.1E-10182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLLNPVSEAL VRDSIRQHLL EESAAVVKEE EATTRPAYRR SASFGSLVAD QWSDSLPFRT  60
DDADDMVVFG ALRDAFAYGW LPDGSFAAVK PEPLPSPDCS SCSYDRSYSF GVAEPPLTPG  120
SSCTTDQATP KREEPEQEQV QEQEQEQAAA AAVARGKHYR GVRQRPWGKF AAEIRDPAKN  180
GARVWLGTYD TAEDAALAYD RAAYRMRGSR ALLNFPLRIG SEIAAAAAAA AGHKRPSPKP  240
ATSSDSSSFS SSSSSSGSPK RRKRGEAAAA AMSLPLVPPP SQLSRPAQPW FPAVPAEQVV  300
AIAPRVEQLV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-40154221168ATERF1
2gcc_A9e-40154221168ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0618881e-101EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds.
GenBankCP0126121e-101CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankAP0149601e-101AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6070061e-101AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAK2431881e-101AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence.
GenBankKJ7275181e-101KJ727518.1 Zea mays clone pUT5377 AP2-EREBP transcription factor (EREB198) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956406.11e-116PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A0A9QX361e-122A0A0A9QX36_ARUDO; Uncharacterized protein
STRINGSi030692m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-36ethylene responsive element binding factor 1