PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g02830.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 189aa    MW: 19790.3 Da    PI: 10.3735
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g02830.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.52.4e-3438133889
                           TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsss 87 
                                   ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c+++ s s+as   s
  Zjn_sc00056.1.g02830.1.sm.mk  38 SKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSAAS---S 115
                                   79********************************************************8888844442222222222...1 PP

                           TCP  88 g................k 89 
                                                    +
  Zjn_sc00056.1.g02830.1.sm.mk 116 FllgkrprqdvvvaheaA 133
                                   122223333344443331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3037133IPR005333Transcription factor, TCP
PROSITE profilePS5136926.8083892IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MASRDDAAAT FHVYGALPAA ASTDAVTPAA KKPPSAGSKD RHSKVNGRGR RVRMPIVCAA  60
RVFQLTRELG LKSDGQTIEW LLRQAEPSIL AATGSGTTPA VFSCSSAPST SAASSFLLGK  120
RPRQDVVVAH EAAAAPQPPF WAALQARPVA WGLSPAQEQQ AYASVAQGHH LNLLSVLSSA  180
TRPAEEESR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647081e-93AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBankAL6630191e-93AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149601e-93AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976294.12e-73transcription factor PCF1
SwissprotQ9FTA21e-41TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0A9DEW81e-94A0A0A9DEW8_ARUDO; Uncharacterized protein
STRINGTraes_2BL_4B6057E06.13e-78(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.11e-39TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]