PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00053.1.g02520.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 524aa    MW: 56000.9 Da    PI: 10.5639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00053.1.g02520.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-19349399255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp +  k +r++lg+++ta eAa+a+++a+ +l+g
  Zjn_sc00053.1.g02520.1.am.mk 349 RYRGVRQRP-WGKYAAEIRDPAQ--KGARVWLGTYDTAVEAARAYDRAAFRLRG 399
                                   7********.**********944..44*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-22349408IPR016177DNA-binding domain
PfamPF008477.6E-13349399IPR001471AP2/ERF domain
SMARTSM003809.6E-38349413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-31349408IPR001471AP2/ERF domain
CDDcd000183.06E-28349408No hitNo description
PROSITE profilePS5103224.619349407IPR001471AP2/ERF domain
PRINTSPR003672.3E-13350361IPR001471AP2/ERF domain
PRINTSPR003672.3E-13389409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MTTGQRPWRE AVWMPPDRLG YSGQGWSGVD GGRKPRVVAL ALTERSMPSP SRSMRPDQGF  60
YVLLETGGTR ERGEQGQPLL RQRTASGSQQ PQPCLAGHVQ RRLSGWQSGS AGRPCSGSGP  120
GARCAAVRAS RVWPSTARTA DPSTPSFSHS ASCGRPLTTK RVSERTSEEA VAACARAVEP  180
TTPGRLASDV SATTSPWVPP GFVRRTRKPP RSTVMSPYLL AAASYIAVGG RVPQPLFNAD  240
ARNAAPAGPC SSPPPTPQRQ VSSSHLKHLD LIRAHLLEDG HDVAAGAVSS DLDGSTASPS  300
PSPPGRRQVP ALSVTLPPRP ATVVVHQQWA AAPSLQVRHQ QGQEDDFRRY RGVRQRPWGK  360
YAAEIRDPAQ KGARVWLGTY DTAVEAARAY DRAAFRLRGS KAILNFPNEV AFGAAARWAA  420
PSAASLNNSY AAAAGNKRTR SPEQSLQWEA AESLRDVKKE RVQEPAASCD YWAAGVAVAP  480
APASGGADFF WEEVEELKGT LCSLPLLSPL SPHPHVAFPQ LSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-27348413469ATERF1
3gcc_A6e-27348413469ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126185e-89CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankAC0847635e-89AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAC0798905e-89AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence.
GenBankAY3418265e-89AY341826.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds.
GenBankAP0149665e-89AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-22ERF family protein