PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00047.1.g02870.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 257aa    MW: 27429.3 Da    PI: 10.2834
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00047.1.g02870.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.8e-1898131134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Zjn_sc00047.1.g02870.1.sm.mk  98 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 131
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.18E-1389132No hitNo description
SMARTSM004011.6E-1892144IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.26896128IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-1496131IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.56E-1497129No hitNo description
PfamPF003201.7E-1598131IPR000679Zinc finger, GATA-type
PROSITE patternPS00344098123IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGGSDVIFPR PSPFRPTIQS IGSDMIQRSK YDPYDIENYR ADGSTGRWAV APPAKMKIMR  60
KATSEFPEGG AARKPRRKAQ AHQDESQQQQ ATGVVRVCSD CNTTKTPLWR SGPCGPKSLC  120
NACGIRQRKA RRAMAAAAAA AASNGGAAVT VKVPEQTKRA KERRAEADRS LPFKKRCKMA  180
AVDQAATAAK AVPAVAVPIP KEDQDQVLPA DSTETAPSLQ SNKGSTPPPA TFHAFPADEI  240
TDAAMLLMTL SCGLVHT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280504e-57KJ728050.1 Zea mays clone pUT6196 C2C2-GATA transcription factor (GATA15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.11e-116putative GATA transcription factor 22
SwissprotQ6YW485e-84CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2S3GN701e-114A0A2S3GN70_9POAL; Uncharacterized protein
STRINGPavir.Aa02907.1.p2e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]