PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g00430.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 254aa    MW: 27217.1 Da    PI: 10.2227
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g00430.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.6e-1899132134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Zjn_sc00045.1.g00430.1.am.mk  99 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 132
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-1390134No hitNo description
SMARTSM004011.5E-1893144IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.26897129IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-1497132IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.55E-1498130No hitNo description
PfamPF003201.7E-1599132IPR000679Zinc finger, GATA-type
PROSITE patternPS00344099124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLGGSDVVFP TPSPFRPIIQ SIGSEMIHRS TYDPYDIENK HADGLTSRWA AAPPAKMKIM  60
RKPTSEYPQG GAARKPRRRA QAHQDESQQQ QATGVIRVCS DCNTTKTPLW RSGPCGPKSL  120
CNACGIRQRK ARRAMAAAAA SNGGAAVTVS LTQQTKQGKK EKRAEVDRSL PFKKRCKMVA  180
VDQSATVPQT ALAIAAPTKD QDHVATGDSS TVTAPSLQSE GSTPPPAMFH TFPADEITDA  240
AMLLMTLSCG LVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.11e-117putative GATA transcription factor 22
SwissprotQ6YW482e-88CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VD771e-116A0A1E5VD77_9POAL; Uncharacterized protein
STRINGSi019058m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]