PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g04860.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 686aa    MW: 74300 Da    PI: 8.7951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g04860.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12536582455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Zjn_sc00043.1.g04860.1.am.mkhc 536 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 582
                                     799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-49131316IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831532581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18535597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-15535586No hitNo description
PfamPF000104.3E-10536582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-18536594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16538587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
RAPEIHSRIR EPPAPSALIP CIRRHPRTHG VLSPCPGARL HTAGRDLATR LALDSAAPAS  60
IRAQGPQSGI MVMKMEIEDD AAIGGGTGGI WTEEDRALGA AVLGADAFSY LTKGGGAISQ  120
GLVSASLSVD MQNKLQELVE SDRPGAGWNY AIYWQLSRTK SGDFVLGWGD GSCREPCDGE  180
VGAAASAGND DTKQRMRKRV LQRLHIAFGG VDEEDYALGI DQVTDTEMFF LASMYFAFPR  240
RTGGPGQVFA AGIPLWIPNS ERKVYPTNYC YRGFLADAAG FRTIVLVPFE GGVLELGSMQ  300
HIAESSDAIQ NIRSVFSGTS NNKAAAQKPE GNGPAATERS PSLAKIFGKD LNLGRPSAGP  360
VAGVSKVDER SWEQRSAAGG GSLLPNVQKG LQNFTWSQAR GLNSHQQKFG NGVLIVSNEA  420
AQRSNGATDN SSATQFQLQK VLPPQKLQLQ KLPQIQKTPP MVNQQQLQPQ APRQIDFSTG  480
SSSKAGVLVT RTSGLDGESA EVDGLCKEEG PAPAVEDRRP RKRGRKPANG REEPLNHVEA  540
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKEMET ERERFLESGL  600
VGGMPRPEVD IQVVQDEVLV RVMSPMENHP VKRVFQAFED AEVRIGESKV TGNNGMVVHS  660
FTIKCPGSEQ QTREKVIAAM SRAMNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-221313179193Transcription factor MYC3
4rqw_B8e-221313179193Transcription factor MYC3
4rs9_A8e-221313179193Transcription factor MYC3
4yz6_A8e-221313179193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517525RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454874.10.0hypothetical protein SORBIDRAFT_03g000570
TrEMBLC5XJK20.0C5XJK2_SORBI; Putative uncharacterized protein Sb03g000570
STRINGSb03g000570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-68bHLH family protein