PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g04330.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 535aa    MW: 58492.8 Da    PI: 6.8888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g04330.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18306356155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++GVr ++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Zjn_sc00043.1.g04330.1.am.mk 306 PRFRGVRKRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAVQLRG 356
                                   689*******.**********88.....55***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.11E-27306366No hitNo description
PfamPF008471.0E-10306356IPR001471AP2/ERF domain
SMARTSM003803.2E-33307370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-28307365IPR001471AP2/ERF domain
PROSITE profilePS5103222.721307364IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-20307364IPR016177DNA-binding domain
PRINTSPR003679.6E-10308319IPR001471AP2/ERF domain
PRINTSPR003679.6E-10330346IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MELKSKATTQ TIELLLRPSP RVLLQLMQMQ KLPVAAGGVM DSDRDGAESA GKAGLFFAEV  60
FVRASGRLDN GRGRATGRIQ ENQVCPKAFQ FGSGYRSTRR HTRLERVTRG QGPPAQETRP  120
FPDRGCHGKL PANETARGWE ITPHVTPADT WVQAHASRDQ SAAAGRISRS YLSVAYWWVL  180
TGSDRHHSTL PHGVMWTTED EDMFAAVRRT EHVELVTTQQ RPRAAGPGPR TVRVFCDDYD  240
ATDSSGDEED HARRRVKRYV QEVRLDHPTV MPAKDSSAVK AAALPSTTTN SARKRNADGR  300
PGSGEPRFRG VRKRPWGKYA AEIRDPWRRV RVWLGTFDTA EEAAKVYDSA AVQLRGSNAT  360
TNFQQASDAT HPFPPQPLPA AASKNNASTS SAAASSHDSG EESVSHGAAA AASPTSVLRS  420
FPPSAVIALA EDVTTACIKT ATITESNGGL FFGCPFSDDG PFGFPPVYTD FDDLLRAEFL  480
PPDEPSLSLP ASFFSPGDVD EERQQSSSSA PTDKWQQVDD FFQDITDLFQ IDHQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17308363662ATERF1
3gcc_A1e-17308363662ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275164e-68KJ727516.1 Zea mays clone pUT5375 AP2-EREBP transcription factor (EREB96) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.19e-94PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A096SCY72e-89A0A096SCY7_MAIZE; Uncharacterized protein
STRINGGRMZM2G142179_P014e-89(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-34cytokinin response factor 4