PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g03350.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 225aa    MW: 24225.1 Da    PI: 6.5398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g03350.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-164896355
                           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++ +g
  Zjn_sc00043.1.g03350.1.am.mk 48 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPLPEMAARAHDVAALSVKG 96
                                  9****998.**********843...6**********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-114696IPR001471AP2/ERF domain
SMARTSM003807.1E-3247110IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2047105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3047105IPR001471AP2/ERF domain
PROSITE profilePS5103222.62947104IPR001471AP2/ERF domain
CDDcd000182.58E-2948106No hitNo description
PRINTSPR003672.9E-94859IPR001471AP2/ERF domain
PRINTSPR003672.9E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSEASSSDAS STSTSSSSRA APSDATRKRP RPQDDDAGPS PQGPVPAYRG VRMRAWGKWV  60
SEIREPRKKS RIWLGTFPLP EMAARAHDVA ALSVKGARAV LNFPDLAGVL PRPASLAPRD  120
VQAAAARAAL MPQRMKQVCG SSYLAAPPAA SSTAVADGLR PRAYSCDEQE PSNQPGQGEV  180
AQLVFDELAP LWVEEVVEFG PSTEHQWTPY DGLDANGFQP RPWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1548104663ATERF1
3gcc_A3e-1548104663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12731KRPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3393745e-72AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
GenBankAP0149575e-72AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0031975e-72AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAK1088735e-72AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968548.11e-73PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9LYD33e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK3XLH62e-73K3XLH6_SETIT; Uncharacterized protein
STRINGSi002749m5e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-43ERF family protein