PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g00690.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 284aa    MW: 30582.2 Da    PI: 8.8523
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g00690.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.83.5e-2943118371
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.......s 71 
                                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++        
  Zjn_sc00040.1.g00690.1.sm.mk  43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLSAARHEIDKLPPLQFPPQdlmvghlP 118
                                   78*************************************************************8888733333220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.70444102IPR017887Transcription factor TCP subgroup
PfamPF036349.2E-2744105IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MISGSNRQAA DEEQARNHAA LASSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR  60
RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLSAARHEID KLPPLQFPPQ DLMVGHLPAP  120
MPLMHEEKFD QLAAAAALAR ERAKAGHGNG AADAEGSGAH NMGRFPNIGY HHFMGLNSSF  180
AMVNSTMAYS NYSGEAWNNN MHENSAAGSP HVAAVAAAAA AGAQHSSLLS LAPGSHQLVF  240
YPSEGDQQFQ VDNLAGAQHS SLLSLAPGPH QLVFYPSEGD RSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2049103155Putative transcription factor PCF6
5zkt_B2e-2049103155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855481e-113BT085548.1 Zea mays full-length cDNA clone ZM_BFc0031O04 mRNA, complete cds.
GenBankBT0858131e-113BT085813.1 Zea mays full-length cDNA clone ZM_BFc0067G09 mRNA, complete cds.
GenBankBT0862231e-113BT086223.1 Zea mays full-length cDNA clone ZM_BFc0133E08 mRNA, complete cds.
GenBankEU9702171e-113EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds.
GenBankKJ7280081e-113KJ728008.1 Zea mays clone pUT6143 TCP transcription factor (TCP30) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814168.11e-117transcription factor PCF5-like
RefseqXP_025814169.11e-117transcription factor PCF5-like
TrEMBLA0A3L6SMS61e-119A0A3L6SMS6_PANMI; Transcription factor PCF5-like
STRINGPavir.J15913.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5