PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g00060.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 418aa    MW: 45211.8 Da    PI: 7.0596
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g00060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.13.3e-34110221189
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++          a+++   
  Zjn_sc00040.1.g00060.1.am.mk 110 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 187
                                   689**************************************************************543221...2111111 PP

                           TCP  74 .eaesssssasnsssg.........................k 89 
                                    e+++++        +                         +
  Zjn_sc00040.1.g00060.1.am.mk 188 tEQGEQV--------TltsygfgsnpggavtgvaggslvqhS 221
                                   1222222........122233444445555555555555541 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-31112223IPR005333Transcription factor, TCP
PROSITE profilePS5136931.678113171IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
LLPLPFRLWG VQVRSLKLEE DKNQLSKGLD PWSNNPTATT STLHYLLQEK EREQLQIYHQ  60
QGFSSYLQHH RRQQQQSRGG SGGDGISSGE STPVDALTTA FGSGRIVRSA AGRKDRHSKV  120
CTARGLRDRR VRLAAHTAIR FYDVQDRLGY DRPSKAVDWL IHNAKAAIDE IPDRPEATEA  180
AKAAAEATEQ GEQVTLTSYG FGSNPGGAVT GVAGGSLVQH SAGADGVKSL FPSSSTASTT  240
PTHDEQYRCS PPDLLSRTTT SSQPQELCLT LQSNQHQIFS HVSSNHHGII TGAGVPGWPE  300
HNQRMPSWHA SENNMGDGHG GGNGDSYMFS MQPRQGLDQS QIFSQGEPIQ SSGGWTSART  360
WLDPLAAIQQ PSAMAGQVGF SHLIGAGGGF MGFLSPATTH QRLHSEEDQQ GSEAMRKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-19118172155Putative transcription factor PCF6
5zkt_B2e-19118172155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-120HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.10.0transcription factor PCF7
SwissprotQ8LT051e-163PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A368RB940.0A0A368RB94_SETIT; Uncharacterized protein
STRINGPavir.Eb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-33TCP family protein