PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g02790.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 391aa    MW: 42685.5 Da    PI: 6.9695
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g02790.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.2e-1246102155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  s+n  ++k+   g ++ ++ Aa+a++ a++k++g
  Zjn_sc00039.1.g02790.1.sm.mk  46 SIYRGVTRHRWTGRFEAHLWDkNSWNEtQNKKGKQGAYDDEDAAARAYDLAALKYWG 102
                                   57*******************8888889785555599***99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-846102IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-1546112IPR016177DNA-binding domain
SMARTSM003806.5E-2047116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1247111IPR001471AP2/ERF domain
PROSITE profilePS5103218.83447110IPR001471AP2/ERF domain
PRINTSPR003674.7E-64859IPR001471AP2/ERF domain
PROSITE profilePS5103211.509128208IPR001471AP2/ERF domain
SMARTSM003808.3E-8135214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-5139209IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-5183210IPR016177DNA-binding domain
PRINTSPR003674.7E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAKPRKNSAA AAANSNSTAA GDVGVRVKPK RTRKSVPREA PSQRSSIYRG VTRHRWTGRF  60
EAHLWDKNSW NETQNKKGKQ GAYDDEDAAA RAYDLAALKY WGPDTILNFP ASVYEEELKE  120
MEGQSREEYI GSLRRHHHNG RWEARIGRFD LSEVDTGIPI DSSTKRPKSK GIPVQRRNVR  180
AATQEEAAMA YDMAAIEYRG LNAVTNFDLS RYIKWLRPGA DSVAAAAAQN PHPMLGGLVQ  240
ELTPVDIDGV AFQHDHHRNQ GTEAHFPLPL KTSLGHTPTT SALSLLLQSP KFKEMIALTT  300
AAESSTTSSS SPPTPSPPRP SPSPPPLQAQ VTNDGSDASP QCSFPDDIQT FFGCEDVAGV  360
GVGVGYTDVD GLFFGDLAAY ASPAFHFELD L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551111e-122BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankBT0396321e-122BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankKJ7275881e-122KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-165PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9XDW01e-166A0A0D9XDW0_9ORYZ; Uncharacterized protein
STRINGOB09G17420.11e-165(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-60ARIA-interacting double AP2 domain protein