PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00037.1.g02680.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 305aa    MW: 32552.4 Da    PI: 8.0728
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00037.1.g02680.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-174292256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                  +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g+
  Zjn_sc00037.1.g02680.1.sm.mk 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDVAARAMRGN 92
                                  69*******.**********84....35999**********************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-3442105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3042100IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2242100IPR016177DNA-binding domain
PfamPF008471.3E-104291IPR001471AP2/ERF domain
PROSITE profilePS5103223.0644299IPR001471AP2/ERF domain
PRINTSPR003673.1E-94354IPR001471AP2/ERF domain
CDDcd000183.08E-2249101No hitNo description
PRINTSPR003673.1E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDDAANAHLY GHVHALHHRS KRPPRAAAAV DEDGDMSPKG GRYRGVRRRP WGRFAAEIRD  60
PMSKERRWLG TFDTAEQAAC AYDVAARAMR GNKARTNFPV HATLGCWPWA PSPVAEPDHP  120
LRPFILQNLL MSSSHQGARC LLQHAGQGHG HINPAPNRMA PPSHPRSAAA SASGVMTTPG  180
AAATSSVSPP HVATLDGDDD VWDGLLKGEP PGAGLLQDAL HDFYPSTRPR GAGRKPSAVT  240
DARALTQQDW NEGFRAASPS GAEDVDEGGD CPMMPQGLLG DVIQFPAFVG FVTAPPTAPF  300
RGRSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1939105269ATERF1
3gcc_A1e-1939105269ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548772e-75EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955046.14e-89PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLK3YYH54e-89K3YYH5_SETIT; Uncharacterized protein
STRINGSi019328m1e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.18e-22DORNROSCHEN-like