PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00037.1.g02190.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 187aa    MW: 20630.2 Da    PI: 9.3482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00037.1.g02190.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13123168655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Zjn_sc00037.1.g02190.1.sm.mkhc 123 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 168
                                     689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-12121172No hitNo description
Gene3DG3DSA:4.10.280.105.3E-15122180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10123168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-13123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKPSSHLNFT RAQQQAAGSS GHLTQMSEDG SAFPLGLIRG DRSSGESSGA ASRSFSGGFS  60
IVGPWEESRD IIATLGAYDP QFSGAIASSA LERAGMDRYM QLQQDQVPFK VRAKRGCATH  120
PRSIAERERR TRISEKLRKL QELVPNMDKQ TSTADMLDLA VEHIKGLQSE LQNLKNEQEK  180
CTCCRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-103EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.11e-100transcription factor bHLH128-like
SwissprotQ8H1022e-47BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1E5USQ61e-103A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Aa01423.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]