PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g04900.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 181aa    MW: 18983 Da    PI: 8.5278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g04900.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-161968255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  gy+GVr+++ +g+Wv+eIr+p   g r r +lg++ t+e Aa a++ a   l+g
  Zjn_sc00034.1.g04900.1.sm.mk 19 GYRGVRRRR-WGKWVSEIRVP---GSRVRLWLGSYATPEAAAVAHDTAVCLLRG 68
                                  8*****777.**********8...435********************9988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-171978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-261978IPR001471AP2/ERF domain
PROSITE profilePS5103221.2981977IPR001471AP2/ERF domain
SMARTSM003804.3E-291983IPR001471AP2/ERF domain
PfamPF008471.9E-81963IPR001471AP2/ERF domain
PRINTSPR003679.1E-92031IPR001471AP2/ERF domain
CDDcd000183.67E-132778No hitNo description
PRINTSPR003679.1E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKRATGSRDA EEPEERRRGY RGVRRRRWGK WVSEIRVPGS RVRLWLGSYA TPEAAAVAHD  60
TAVCLLRGGD VAALNFPERA AAAYGGHTGA DGSMSPPSVQ RVASDAGMAA DAQLVAARDS  120
VADPAAWHGH LASRVASDAG MAADAQLVAA RDSVADPAAW HGHLASVADA HDGARARTNV  180
E
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276764e-69KJ727676.1 Zea mays clone pUT5603 AP2-EREBP transcription factor (EREB63) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970828.16e-45PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I85e-30ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLB6SP652e-42B6SP65_MAIZE; Transcriptional factor TINY
STRINGGRMZM2G307152_P014e-39(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.16e-22ERF family protein