PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00031.1.g02230.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 452aa    MW: 47637.3 Da    PI: 8.5962
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00031.1.g02230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.32.2e-411062093104
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 
                                   ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s a
  Zjn_sc00031.1.g02230.1.am.mk 106 PAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGA 186
                                   689*****************************************************************9999999999999 PP

                           TCP  83 snsssg.kaaksaakskksqksa 104
                                   s++s++ +aa++ ++ +++q+++
  Zjn_sc00031.1.g02230.1.am.mk 187 SHHSAAsRAATAFHHLQPQQHDQ 209
                                   98888844444444777777765 PP

2TCP25.83.3e-0820931254134
                           TCP  54 qakpaikeltgtssssasec.eaesssssasnsssg.kaaksaakskksqksaasalnlakesr................. 115
                                   qa+pai ++tgt++++a+++  a+s +s as++s++ +aa++ ++ +++q++ a++l  +++ +                 
  Zjn_sc00031.1.g02230.1.am.mk 209 QAEPAIVAATGTGTIPANFSsLAVSLRSGASHHSAAsRAATAFHHLQPQQHDVAAMLGWNHHYQqqqqqllqppppqqqap 289
                                   9****************9999999999999988888455566669*************99988877888888888888888 PP

                           TCP 116 ....akarararertrekmrikn 134
                                       a + +r+r+r++++ ++++
  Zjn_sc00031.1.g02230.1.am.mk 290 qdpgAGEFMRKRYREADDLFKDT 312
                                   88888888888888887777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-36111204IPR005333Transcription factor, TCP
PROSITE profilePS5136928.349111165IPR017887Transcription factor TCP subgroup
PfamPF036341.9E-5209307IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDHGAAPSSS TSTSTNSSRS ASEQQQHHHH HQHQQAHQQV QHHAFYYAAA APGGAANAAA  60
AAGMAPFMGS LSIVPAAAAA GEAQAAQQAA PAASSGEEKK QQVVVPAKRP TKDRHTKVEG  120
RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV  180
SLRSGASHHS AASRAATAFH HLQPQQHDQA EPAIVAATGT GTIPANFSSL AVSLRSGASH  240
HSAASRAATA FHHLQPQQHD VAAMLGWNHH YQQQQQQLLQ PPPPQQQAPQ DPGAGEFMRK  300
RYREADDLFK DTAARQQQQQ QPDGADEPEE QKARALPTAM WAVAPNSSAA GGAFWMQPAW  360
AFGGGGPAAA GTVQAPLQFM STRSGSDFPG GHMADNSIGM LAALNTSVQH QHQHQQDEQP  420
QQQQPKSTMA QQQRHRAGAN GGNAGHGAAS PQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718041e-107AB071804.1 Oryza sativa Japonica Group mRNA for transcription factor PCF3, partial cds.
GenBankAC1205391e-107AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence.
GenBankAP0149671e-107AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978832.11e-108transcription factor PCF3
SwissprotQ53PH26e-84PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0A9G9I11e-113A0A0A9G9I1_ARUDO; Uncharacterized protein
TrEMBLA0A3L6F3H41e-113A0A3L6F3H4_MAIZE; Transcription factor PCF3
STRINGGRMZM2G003944_P011e-111(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.17e-43TCP family protein