PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g01380.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 413aa    MW: 42115.8 Da    PI: 6.0056
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g01380.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.48.7e-411062502132
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                                   +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  + s +s 
  Zjn_sc00028.1.g01380.1.sm.mk 106 TVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFStLNISMRSG 186
                                   5789*****************************************************************999433332222 PP

                           TCP  82 asnsssgkaaksaa.kskksqksaasalnlakesr...............akarararertrekmri 132
                                   a+   +++a++++a   ++++++ +++  ++ +++               a   a  r+r re+ ++
  Zjn_sc00028.1.g01380.1.sm.mk 187 AA---AARASPFSAlALHPQPHDMSAMMGYHPHHHflppqqpqessqdpnAGGAAYVRKRYREDLFK 250
                                   22...33555555557777788877788887777767666666655555544444455555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-37112271IPR005333Transcription factor, TCP
PROSITE profilePS5136928.31112166IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDHGGGGGGG GVPSSSNSAG ASAGGGGTSG SRGGEPQQHP HHAFYYTGPA APAGSNSGVP  60
PPPPSQQQAS PFAGALAITP VPAGDQAQPS ADKKAVVAAA PAAAGTVAKR PSKDRHTKVD  120
GRGRRIRMPA LCAARVFQLT RELGHKSDGE TIEWLLQQAE PAILAATGTG TIPANFSTLN  180
ISMRSGAAAA RASPFSALAL HPQPHDMSAM MGYHPHHHFL PPQQPQESSQ DPNAGGAAYV  240
RKRYREDLFK DDDDEDTNRQ DPKAREAQQQ AAAAPSAAMW AMAPNTAAPG GAFWMLPVSA  300
TSAAAAAAAA RPAEQPMWSF GAAAAGGSGT TVQAPLQFMS RAATYPTAGG GNDTNLGMFA  360
AVNPYNRGAN EDQQHEAEQQ RQRGGGDGGA AEDEEDGDDS GEENHGGDNN SSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836911e-109BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds.
GenBankKJ7269511e-109KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808168.11e-122transcription factor PCF3-like
SwissprotQ53PH22e-65PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A3L6T4N81e-133A0A3L6T4N8_PANMI; Transcription factor PCF3-like isoform X2
STRINGGRMZM2G089638_P011e-113(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-41TCP family protein