PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g02710.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 349aa    MW: 38424.8 Da    PI: 10.3081
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g02710.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-124391155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  s+ykGV   + +grW A+I++      r +r++lg+f  ++eAa+a++ a+++++g
  Zjn_sc00027.1.g02710.1.sm.mk 43 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEDEAARAYDVAAQRFRG 91
                                  78****9888.8*********......44**********99*************98 PP

2B393.41.6e-29169268192
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+k  tpsdv+k++rlv+pk++ae+h          ++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++g
  Zjn_sc00027.1.g02710.1.sm.mk 169 FDKMVTPSDVGKLNRLVIPKQHAEKHfplrlpasTVVECKGVLLCFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKG 249
                                   8999*************************9998866666999*************************************** PP

                                   --TT-EEEEEE-SSSEE.. CS
                            B3  74 LkegDfvvFkldgrsefel 92 
                                   L++gD + F+++   e++l
  Zjn_sc00027.1.g02710.1.sm.mk 250 LRAGDAIGFYRSAAGEQQL 268
                                   **********776555545 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.43E-234399No hitNo description
SuperFamilySSF541711.18E-164399IPR016177DNA-binding domain
PfamPF008472.9E-84391IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-194499IPR001471AP2/ERF domain
PROSITE profilePS5103220.2054499IPR001471AP2/ERF domain
SMARTSM003802.2E-2544105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.6E-41161284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29166273IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-29167261No hitNo description
PfamPF023622.2E-26169270IPR003340B3 DNA binding domain
SMARTSM010194.5E-22169275IPR003340B3 DNA binding domain
PROSITE profilePS5086313.563169274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDSTSCLLDD ASSGASTGKK APATEPRRPL QRVGSGASAL PSSRYKGVVP QPNGRWGAQI  60
YERHQRVWLG TFTGEDEAAR AYDVAAQRFR GRDAVTNFRS LGDSSDPDAA AELRFLASRT  120
KAEVVDMLRK HTYLDELAQN RRAFAAVCPS PPPPLPSKNP SASAREHLFD KMVTPSDVGK  180
LNRLVIPKQH AEKHFPLRLP ASTVVECKGV LLCFEDAAGK VWRFRYSYWN SSQSYVLTKG  240
WSRFVKEKGL RAGDAIGFYR SAAGEQQLYI DCKVRSTTRT SSSTAGPVKA VRLFGVDLLT  300
KPRPASAAPP VQEEMTVAMK NKRPGEFIIT SSTPPHMFFK KQCVDFAPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5216628311125DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-159Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A3L6SXE90.0A0A3L6SXE9_PANMI; AP2/ERF and B3 domain-containing protein
STRINGSi024576m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-108related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]