PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g01170.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 542aa    MW: 56095.3 Da    PI: 6.8241
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g01170.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.31.3e-34181275282
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............sss 68 
                                   +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l  +               + 
  Zjn_sc00026.1.g01170.1.sm.mk 181 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDKLEVLpawqptatatnaaaAAA 261
                                   79**************************************************************66554443333222111 PP

                           TCP  69 saseceaesssssa 82 
                                   ++s++ ++s ++s+
  Zjn_sc00026.1.g01170.1.sm.mk 262 PSSSTHPDSAENSD 275
                                   11111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.5E-32181277IPR005333Transcription factor, TCP
PROSITE profilePS5136933.319183241IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQHHHQ RLLQLHQEGQ  60
DQEPPSVPVF QLQHMQAAAL RQPASSAEYA LLAPMGDAGQ SHHHHHGFQP QLLSFGGVGQ  120
HHQLHQFTAQ APAAGSASHS RSRAAAAGGG GGEIVPASQS RVRSGGGEIV AVQGGHIVRS  180
TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKNAKEAIDK  240
LEVLPAWQPT ATATNAAAAA APSSSTHPDS AENSDDQAQA ITVAHTGFDF PSGAAGASGG  300
GGTGFLPSSL DSDSIADTIK SFFPMGGTGG GEASSSTAGA QSSAMSFQSY TPDLLSRTGS  360
HNQELRLSLQ SLPDPPMFQH QHPQPEHDRS HGHGGNGSAQ QALFPGAGSY SFGGGAMWGA  420
EPAQSQRLVP WNVPDPGGGY LFNVSQQAAH MQAAAAAALG GQSQFLFQRG PLQSSNQPSD  480
RGWPETVEAD NPMSAIGFAP GVGFSGFRIP ARMQGEEEHN DGGGGGGEKP PPPPSVSSAS  540
HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-20188241154Putative transcription factor PCF6
5zkt_B1e-20188241154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-64TCP family protein