PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00024.1.g00990.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 469aa    MW: 52207.2 Da    PI: 9.5434
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00024.1.g00990.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.2e-11178227156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a + a+++++g+
  Zjn_sc00024.1.g00990.1.am.mk 178 SRYKGVVPQP-KGRWGAQIYE------RhARVWLGTFPDEEAAARAFDVAARRFRGH 227
                                   78****9888.7*********......44*************************997 PP

2B376.62.7e-24291386183
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeF 68 
                                   f+k+ tpsdv++++rlv+pk +ae+h        + + + ++ l +ed +      ++W+++++y+ +s++yvlt+GW++F
  Zjn_sc00024.1.g00990.1.am.mk 291 FEKAVTPSDVGRLNRLVVPKVHAEKHfpplsekdDDDDAAPVLLAFEDADPnggngKVWRFRFSYWSSSQSYVLTRGWSRF 371
                                   89****************************99996667899999999965455888************************* PP

                                   HHHHT--TT-EEEEE CS
                            B3  69 vkangLkegDfvvFk 83 
                                   v+++gL +gD+++F+
  Zjn_sc00024.1.g00990.1.am.mk 372 VREKGLAAGDTITFS 386
                                   **************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF034694.3E-20981IPR005379Uncharacterised domain XH
CDDcd000182.20E-11178234No hitNo description
SuperFamilySSF541711.18E-15178234IPR016177DNA-binding domain
PfamPF008471.4E-6178227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-20179234IPR001471AP2/ERF domain
SMARTSM003807.8E-23179240IPR001471AP2/ERF domain
PROSITE profilePS5103220.784179234IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.9E-33283388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-26286387IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-24289385No hitNo description
PfamPF023624.8E-21291386IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619291399IPR003340B3 DNA binding domain
SMARTSM010191.7E-15291400IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MQEAEDVMIK EVLREDDVKL QELREYGEEA YAAVTKALTD LNTGNGSRRT PFPVLWNFEK  60
DRKALMKEAV QRALKLWKTE KWSDLGPLLT VRILKLHSAK PHVKLHAACA AMLTLASWHR  120
EHQSMYGWLY HKHQRRRSRS SPLFHHLPLC RRTAMLTPSS TQEAQRAGMV ASQAAPASRY  180
KGVVPQPKGR WGAQIYERHA RVWLGTFPDE EAAARAFDVA ARRFRGHDAA VNFPGPADAD  240
ELAFLAVRPK AEVVDMLRKH TYDDELRQGL RSVSGGGGVC EADPVPRTPL FEKAVTPSDV  300
GRLNRLVVPK VHAEKHFPPL SEKDDDDDAA PVLLAFEDAD PNGGNGKVWR FRFSYWSSSQ  360
SYVLTRGWSR FVREKGLAAG DTITFSQAAT PPTPTTTSAD GEAYTARRLF IECRKRKRTR  420
TDSDGSVVVD GCPDHGGDAR VVRLFGANIA AAIGGHAFVE VEPQLQVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-3629038813103DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.11e-112AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS77e-91Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2T7E8E61e-116A0A2T7E8E6_9POAL; Uncharacterized protein
STRINGTraes_3B_68BFA25F1.12e-97(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-73related to ABI3/VP1 2