PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g03960.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 409aa    MW: 43094.4 Da    PI: 7.5729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g03960.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000273043371654
                                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     + ++   L++l+ +      +K + a++L +++eYIk L
  Zjn_sc00023.1.g03960.1.am.mkhc 304 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 337
                                     555666677777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-4298341No hitNo description
SuperFamilySSF474595.5E-10298350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-7298346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGDHAEMLHA APAMYYAAGG AAPHGGWWNT AATCSTELAG VSTWSSALAG SYDIAAEGAK  60
AKSATTASSV SPGNNSSVTF QEPTTGVADA AGVAVQQPLA SFTDWSHLVN GSGVTLHGFL  120
QDGQQHDMSS RTDQLNHINA PSLMNPSSNN LTLQGHHEQG HGHQQPMSNF NLGSELLLSP  180
TSPYGIQSSL LRSLVEPMAA TVAKPALPAG FQQYDQYGHQ MGMGQAPAAG RFALPLQFTN  240
EAAAFWNPSA GFGALAPEPN QASLGAAKPS PVTNKKTNGQ PAFKKPRLET PSPLPTFKVR  300
KEKLGDRVTA LQQLVAPFGK TDTASVLHET IEYIKFLHDQ VGALSAPYLK KKGHQVPHLK  360
SSSPDKSKDG HGEILLKGRG LCLVPISSTF AVASEVPVDF WTPFGANFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693661e-116AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
GenBankCT8327011e-116CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.36e-49bHLH family protein