PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g07910.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 744aa    MW: 79274.5 Da    PI: 10.512
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g07910.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.69.3e-34229338889
                           TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 
                                    +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++     +++ssss  +
  Zjn_sc00022.1.g07910.1.am.mk 229 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapSTSSSSSHYQ 309
                                   589*******************************************************99999444322221111111111 PP

                           TCP  84 nsssg..........................k 89 
                                   +   +                          +
  Zjn_sc00022.1.g07910.1.am.mk 310 Q---SvlgkrpreegdatvaaasafwaalpsA 338
                                   1...1234444444555555544444444442 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-30228308IPR005333Transcription factor, TCP
PROSITE profilePS5136927.009229283IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MSNRSALCEP IPYRGAICGC SMTDWNDAVR TNFHQVALAR QIASKRRYSY LVSRGPRPPN  60
RACIRPRRPG DGPARDADAG LHARGQRYRA STSIQGRNLE NAISIHEVLP QQRAPLPGSF  120
SIDFDSSSTQ NPCDLSVRCP ATARQRGLER QGISALALGA PQVHTSTSRQ RYETGAMPTR  180
DVSTAAAAMF HVYQPAQIPS TAAPATAATD GTVKVPASTQ GKKKAAQGGK DRHSKVNGRG  240
RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS  300
TSSSSSHYQQ SVLGKRPREE GDATVAAASA FWAALPSAAP RTEAWGFSPL EAQAATYVPM  360
AQAHHLNLLA ALSGAARRAE EETRVLDFVC ASQSVGEQFH FAPVGRFSSL SLGIASRGKG  420
TEGKRLRRLQ PAPQQSCRLP PAYENFANAN GEKVEAVASA PERTRSGFVS NPEATSSRRP  480
NCYQLTRPAM VDGCHGARPW RSGLAVACAL AAGKADPKGT WPSSEENEGG EARKRVKLPA  540
DAWTHADKTH AGLSKQCGAV LFRSPCRAPA PCCWLTTKLL VYVHRPRTSM ATHHTTPNDE  600
AESVGTRDRD ETGPCCRDFS ARDGAMPGQV RAGTPYRTAA RATSCLPTAR RVARSLSGQI  660
LFRCLASPAP TGRPRAGFGE APRRSTGRAL SSLINAVVAR QTGEEACARQ LGFGPATVLQ  720
LKSAERLSPA DCQLLGSLAL APGC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.19e-30TCP family protein