PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g00190.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 236aa    MW: 24942.2 Da    PI: 9.1711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g00190.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-17115161155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GVr+++ +g+WvAeIr         r +lg+f+taeeAa+a + a+ +++g
  Zjn_sc00022.1.g00190.1.sm.mk 115 SKFRGVRRRP-WGKWVAEIRA-------VRKWLGTFDTAEEAARANDVAAVEFRG 161
                                   79********.**********.......9*********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-11115161IPR001471AP2/ERF domain
CDDcd000186.81E-28115171No hitNo description
SuperFamilySSF541711.18E-19115170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-25116170IPR001471AP2/ERF domain
PROSITE profilePS5103222.563116169IPR001471AP2/ERF domain
SMARTSM003803.7E-30116175IPR001471AP2/ERF domain
PRINTSPR003676.0E-11117128IPR001471AP2/ERF domain
PRINTSPR003676.0E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVPRLERGGF TLPNAEQENS LFLRALISVV SGDTAVPTLD DLAETKPHVA AATAPAAAAA  60
YCPRCGVLGC PGCEPFAGNA AATTGLSSDS EEERESASHV VTGCVGKRRR RARASKFRGV  120
RRRPWGKWVA EIRAVRKWLG TFDTAEEAAR ANDVAAVEFR GRRAKLNFPA DAAAVLSAHS  180
SWAMVQPVAE SLRESCGSNA VSPVHMTQAP TRRQLGGGPI TDHLDLQGNA KTTAVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-15112169163ATERF1
3gcc_A7e-15112169163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106122KRRRRARASKFRGVRRR
2107123RRRRARASKFRGVRRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749758e-37EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankCP0126108e-37CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.11e-61PREDICTED: ethylene-responsive transcription factor ERF109
TrEMBLA0A0E0CRW32e-62A0A0E0CRW3_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g52670.13e-61(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.18e-11ERF family protein