PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g07570.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 197aa    MW: 22449.1 Da    PI: 10.7012
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g07570.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.6e-0849120155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse....ng........kr....krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  s+    n+         r       + g ++ ++ Aa+a++ a++k++g
  Zjn_sc00018.1.g07570.1.sm.mk  49 SIYRGVTRHRWTGRFEAHLWDkNSWsetqNKkgkqgqslLReleaIILQTGAYDDEDAAARAYDLAALKYWG 120
                                   57*******************98889996558888876622677999********99*************98 PP

2AP229.81.5e-09163197138
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++g 
  Zjn_sc00018.1.g07570.1.sm.mk 163 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGK 197
                                   89****99**********99966...3.6********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-1149130IPR016177DNA-binding domain
PfamPF008471.4E-44982IPR001471AP2/ERF domain
SMARTSM003802.1E-1650134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1150130IPR001471AP2/ERF domain
PROSITE profilePS5103217.14850128IPR001471AP2/ERF domain
PRINTSPR003673.9E-65162IPR001471AP2/ERF domain
PRINTSPR003673.9E-6110130IPR001471AP2/ERF domain
PfamPF008471.6E-5163196IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-5163196IPR016177DNA-binding domain
PROSITE profilePS510329.756164197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-4164195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MARPRKTSAA ANSTSNNAAV GDVDVRVKPK PRKRTRKSVP RESPSQRSSI YRGVTRHRWT  60
GRFEAHLWDK NSWSETQNKK GKQGQSLLRE LEAIILQTGA YDDEDAAARA YDLAALKYWG  120
PDTILNFPAS AYEEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR  180
IGRVFGNKYL YLGTYGK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699101e-109BT069910.1 Zea mays full-length cDNA clone ZM_BFb0327D19 mRNA, complete cds.
GenBankBT0551111e-109BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankBT0396321e-109BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankKJ7275881e-109KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-101PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y61e-79WRI1_ARATH; Ethylene-responsive transcription factor WRI1
SwissprotQ94AN44e-80AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLJ3MXL31e-101J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.11e-101(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-70ARIA-interacting double AP2 domain protein