PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00018.1.g06940.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 557aa    MW: 61342.1 Da    PI: 9.5337
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00018.1.g06940.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.35.7e-34398478383
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssas 71 
                                    ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l +             s     
  Zjn_sc00018.1.g06940.1.am.mk 398 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLSEPthrgsgsgdaamS----- 473
                                   689*********************************************************9995555443222111..... PP

                           TCP  72 eceaesssssas 83 
                                    +       +++
  Zjn_sc00018.1.g06940.1.am.mk 474 -S------PMSA 478
                                   .1......1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.922399457IPR017887Transcription factor TCP subgroup
PfamPF036345.7E-33399479IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MRRRSLMASS CSPHGRPADA NTAMDELSLG VIRWQAHGLG DGTHQRQVQG RRRDRVRCES  60
LAERRAVVTF PSRDRVPLVH RPVRVRLVWT LGRRRSQQWR HAETERAKAR SNPKIGTPRN  120
RSTMLSLPPL LCTQFCATRL AVRDSTEAAP HAAMESHATA APAVKMIQRM VRAMSRFEGQ  180
QGTTALAPSC AAMPSIDRDE QCVCVRARTW PLLLVSLQLI CRTGGGGGLA GRGCSPCPTC  240
TRQWRWTRHS LDPKICSSTC ERSCERGSGR GQEIAAAAAQ ELARSRSPLS LGSLQMLPYH  300
NPHHFGISQE QPHPNPATAG FPMGPPVVHP DQQHYDHHFF PGHAHYFNSE TLEAVLRPPR  360
AASEREVVGV MPVPQGASRN SVAGAGGQGN ARARKRPFRT DRHSKIRTAQ GVRDRRMRLS  420
LDVARDFFAL QDRLGFDKAS KTVDWLLTQS KPAIDRLSEP THRGSGSGDA AMSSPMSAEI  480
VKETAAAGSG KGSVEKTASR NSSFMDHSCE LDRLVSAAPV LGEYYYEFGE MMGSNEGEGD  540
DDGEYDEDGD FLDNMQY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5786202e-85KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786212e-85KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786222e-85KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.15e-25TCP family protein