PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g04580.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 335aa    MW: 36262.1 Da    PI: 4.8838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g04580.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18120171156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   ++y GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g+
  Zjn_sc00017.1.g04580.1.am.mk 120 TRYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTADEAAIAYDRAARNIRGA 171
                                   5799******.**********754...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-28120179No hitNo description
PfamPF008472.3E-10121170IPR001471AP2/ERF domain
PROSITE profilePS5103221.008121178IPR001471AP2/ERF domain
SMARTSM003802.2E-31121184IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-20121178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-28121178IPR001471AP2/ERF domain
PRINTSPR003675.0E-8122133IPR001471AP2/ERF domain
PRINTSPR003675.0E-8144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEVGHVDPI MRRAVTLPMP PPVQILVLSR LFISSSRFPA LYILCHATAP CSCGNRLLVL  60
SPNGHNEPPS LAPGLTESEK PAVTLSMDFS YFFSSSSSSE KKSSKRRQQQ QQQQDSGSAT  120
RYLGVRRRPW GRYAAEIRDP VTKERHWLGT FDTADEAAIA YDRAARNIRG ASARTNFAYP  180
DLPPGSSVTP YLSPDISADQ LQQYYANPVP VAQQPTPAAD QLAGHGSPGC EAYSSSYHVP  240
EAISSYGADD SMAYAGNAQM DMMYDGGAGA GAGMAWCDAS ELEFGGYRDD NANANASHGM  300
YFEEGYVHSP LFSPMPAADE VDGFQLGGSS SSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-16122177359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107KKSSKRRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278671e-88KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952596.11e-107PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A060D6U51e-103A0A060D6U5_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G047999_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-27ERF family protein