PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00017.1.g01350.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 436aa    MW: 46058 Da    PI: 10.5624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00017.1.g01350.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.6e-07349381642
                                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKae 42 
                                     +++Er RR ri +++ +L+el+P+ +     k ++K +
  Zjn_sc00017.1.g01350.1.sm.mkhc 349 SIAERERRTRISEKLRKLQELVPNmD-----KPPNKLS 381
                                     689*********************55.....4455544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-6346382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.47E-5347383No hitNo description
Gene3DG3DSA:4.10.280.104.4E-6348381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MPASFPLQRG TSDPTSLVEP GGPSLSFAPS PARLGSFKPT TTPRSSHLRQ HPPAPPPNLP  60
CFYASRAHQQ PKLTSSRPGA HRARLPGRRL VNFTPAQRPE GAVGMRRFMP GSGGVEPSSS  120
PSSGGQQRHH QHGERGGDTA AAGGLRYGGG DISLGHGHDG RLPQLGVDSA GRNEDRQQDG  180
SMDMLARHSS SPAGFFSNLV MDNGYPSSKG AGGSGAEPHH HPSKASNVNS RKINFTRQQQ  240
QGAASGHLSQ ISELDGGAFP PGLSAGGRSS GESSGAASRS FSGGFSIVGP WEESREIIAT  300
LGAYDPQFSG AMAGSALEMA GMDRYLQLQQ DQVPFKVRAK RGCATHPRSI AERERRTRIS  360
EKLRKLQELV PNMDKPPNKL STANQRNVPD GTANEHSGHV GPCSGAHQGS AERAADSEAR  420
AREVYLLQKA MTVATY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-107EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.11e-98transcription factor bHLH128-like
TrEMBLA0A1E5USQ65e-99A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Aa01423.1.p4e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-27bHLH family protein