PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g04730.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 1099aa    MW: 116743 Da    PI: 10.077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g04730.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.3e-16563609455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Zjn_sc00016.1.g04730.1.am.mk 563 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 609
                                   5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-20556618IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-17556613No hitNo description
SuperFamilySSF474596.02E-20557619IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006559608IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-13563609IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-17565614IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
MATTNAGQDR TGSRRTSELA RAPTGQDAPP VGVRWPGERQ RAREGAGNQR SASRHGGGGW  60
TYGTGANQKP GSTGSRIWRG SNACASRDAR GRLDFAGRPV GAGRPLSPRA GIHAGRCRRR  120
DTFSAGSLTN EFLAPLTSPC NRNTNGWVFP TCPPLPADPS QWRHLLGFLG LGWWRVALNN  180
SPRPLPLLVS ILNLHTPNAT VPAPAPTAVL SRRAAPSPVT HLSPRQPPSR RCAVSPLVTR  240
RNRPGDELAE LLWDSNCPAL RTTPHFPAAA PFQPFTCSAA GSSRANELLN KRHAVGAMDD  300
DVAGLGGIPA VHHDHDHDAV PWLHCPVIDD GDSDTAPLPP EYCAGLLSPG YPGLHALPDP  360
TPTVSDIARS SSTGGAVVVP ATRAVTPEAA PAQPQPGAAG EGVMNFTFFS RPLQRLQPSA  420
AAAPPPSNLL ESTTAAQTAA SRLRNTPLFS EQRMAWLQPP KGPPRATAGA PPATDRHHHA  480
EAAATVTQNR MQQPPDARPP DTTAAVTTSS VCSGNGDRSH DKRSSHHPTA ECSVSPDEDM  540
DDEPGAVGRP TTRGTKRSRT AEVHNLSERR RRDRINEKMR ALQELIPNCN KIDKASMLEE  600
AIEYLKTLQL QVQLMSMGTG LCVPAAPMLM QMQMPLVAPP FPHLGMGLGF GAVGFDVLPR  660
FAAAQFPCPV MPPGAVFGMP GQIVPSPLAP FAHVNGAATV EHREAAAAAA PAPPGGGAAA  720
GDRQPSVPVP LQATIDQNHH FFSGRPEAAA PEADVTADDA AYPRAVADRM HPWSCAAEFG  780
LAAREAGVDL GSESLAAVSM RRYAESLLQG VASRVREQAL RVQLSAYQLK GPVRHASVDA  840
RGVAKTTSMD TRRFPFLRVT VHACADAEQA SKAELILILK PCVRLGREQR IWVLVAVASQ  900
ALGRRSRTSA SVQIHGLATP RSLLPCRSQQ QLFSLCSAPP PTGAGRSRGG GTGRRATLRG  960
GKESGIGPTV SVGLLRQPML KMSGPQCDSA HETPSRTGVM FTLGLFLSGI DHDRISSLYS  1020
YLTVAVSESL SQSSSHVCLK HITTWEQYNK IKVASSSSSE ANDEWPSRKG ARLSRRGSFR  1080
AKGKGRQQWP APEVDPEPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1567572ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6679001e-57AB667900.1 Oryza sativa Japonica Group APG mRNA for basic helix-loop-helix protein APG, complete cds.
GenBankAK2879581e-57AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-33phytochrome interacting factor 3