PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g02730.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 213aa    MW: 22906.3 Da    PI: 4.5937
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g02730.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-181969256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  +ykGVr +k +grWv+eIr p++   r r++lg++g+ae+Aa+a +aa+ +l+g+
  Zjn_sc00015.1.g02730.1.am.mk 19 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYGSAEKAARAFDAAAVCLRGA 69
                                  7******99.**********933...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.4561977IPR001471AP2/ERF domain
SMARTSM003801.8E-311983IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-181978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-271979IPR001471AP2/ERF domain
PfamPF008474.2E-111968IPR001471AP2/ERF domain
CDDcd000189.54E-181979No hitNo description
PRINTSPR003673.7E-82031IPR001471AP2/ERF domain
PRINTSPR003673.7E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDDGAEASRG ESSSPPERRY KGVRLRKWGR WVSEIRMPNS RERIWLGSYG SAEKAARAFD  60
AAAVCLRGAR AGSLNFPESP PNVRYIPGAQ LTPGQIQAEA VRHANQPASP VAAATPAGRG  120
SNDRTPFSSA PTSTTTCNGL ATPGDDELDW SFMDELPSMP ASSAGTNAEL VPAMDDFMVG  180
SPHPVMPPSE GRAQDMVDDD DDHAFISDDL WRF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283825e-90KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973610.11e-94ethylene-responsive transcription factor ERF018
SwissprotQ9S7L52e-33ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLK3YLA42e-93K3YLA4_SETIT; Uncharacterized protein
STRINGSi015027m4e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.14e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]