PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g01550.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 428aa    MW: 46529 Da    PI: 8.3867
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g01550.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP162.62e-501783341136
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 
                                   aa +kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LG+dk+skt++WLl+ +k+ai+e++ +  +++sec e++sss 
  Zjn_sc00014.1.g01550.1.am.mk 178 AASRKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGYDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSL 256
                                   588**************************************************************..66666999999999 PP

                           TCP  81 sasnsssg......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                   s++ ++ +                      ka+++++++k+++ksa+++  l+ke+rakar+rarertrek+r+++++
  Zjn_sc00014.1.g01550.1.am.mk 257 SVDGKQDPteepggdqqqkgsgcsegkkpaKARRATTTPKPPRKSANAHPVLDKETRAKARERARERTREKHRMRWVK 334
                                   9996666677778888888899*******77777777**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-44180330IPR005333Transcription factor, TCP
PROSITE profilePS5136934.876181239IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.54310327IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVQQVRPCVL TSPHPREQQA ARYRSPLPVS PLSSIRRHTS LSLSQDLREG RETHQGLGVP  60
SPKQMFPFCD SPSPMDMLLY QQLQLSPPSP KPDQYSSFYN YPCSPPFAAA ADDDASSFHL  120
SYQQLGSAAA VTPPPAVIDS PELQIHPSME QPPAPKHDPS NAQGAGGAVS LDTASAAAAS  180
RKDRHSKICT AGGMRDRRMR LSLDVARKFF ALQDMLGYDK ASKTVQWLLN TSKAAIQEIM  240
TDDASSECVE DGSSSLSVDG KQDPTEEPGG DQQQKGSGCS EGKKPAKARR ATTTPKPPRK  300
SANAHPVLDK ETRAKARERA RERTREKHRM RWVKLASAID VEAAAGRDRP STSNLNHSPS  360
MNMASAAAEL EERCSSTLNN GGRTQQVSMA TEPSDMILTF GNGGYGGINY CQEQWELGGV  420
VFANSRFY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982035.11e-167transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI21e-142TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A346M1070.0A0A346M107_CYNDA; Teosinte branched 1
STRINGPavir.Ia00838.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-24TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]