PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g06310.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 878aa    MW: 92779.5 Da    PI: 12.0314
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g06310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.41.3e-346227392124
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 
                                    g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a  ai +l+ +  ++a ++   +++ ++
  Zjn_sc00013.1.g06310.1.am.mk 622 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAIEWLINAAAGAIEKLPAL-DPAAFAVvpAPNEAKV 701
                                   579*************************************************************.4444344664444455 PP

                           TCP  81 sasnsssgkaaksaakskksqksaasalnlak.esrakararare 124
                                   +++     +  +++  s+ s++s+ s l+l++ +sra+a+ r re
  Zjn_sc00013.1.g06310.1.am.mk 702 NQQ-----R-GSKSGGSSTSETSKGSELSLSRsDSRASAS-RDRE 739
                                   544.....2.222334444555555557777745554443.3344 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-33623730IPR005333Transcription factor, TCP
PROSITE profilePS5136932.181624682IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MVDNAPVTIS TIDKEGTVDA QRFCRGGISS RSRATGRRCG ISSALSRRRD RIALLRAQYR  60
LRRRSAFLRP VTVCLAHGAM IELSQYSGNL VCYGRVCLRS GLRLSDRIRS RRSHRSDRIA  120
LLFDARLRIL FGAAPSPSIP GRNVSPGAAN GDRTSGAAQP ITTRGHFHTG RGRAATRRRG  180
FPSGACQKIP RPVGESVCRR IPGQWVKAAA GESRHVDFHR ERGAAAVRAR SSPVVRPALR  240
CVLRDFVAGN KQISTVAGGR QETTVKSMAG TGALPCRQVL RRHVQPASPS RGCRRHLLIN  300
LIPLPGAATG IDGCQPPRRR TSPSRLSPVA AKCQLLRVFF SAVEAAEQAV AMHMRRLPLG  360
AAAAAAIRYA RYGSKRRIAA ASLPSTAARP TRPTDRFTDK CARAVQRRRR HQISHSAGPS  420
KACRRLLLRG SARRVRREER ERGLLRVSVR AGGLEATAKT PRKGVAGARG DKTGRGGVRA  480
AAGPARTSTP ETGASSTRSR CHISAAAAAA AALPPLAPSS RKLPGAASPP HPPQELLHKD  540
GAFPPLAAPA AYERLQRAGM DDGAAGGAGA GELGRSQGAK RGRGGVMRGS EADAAAWGQP  600
PALPPPPQGA GTASRICRVG RSGGKDRHSK VYTAKGIRDR RVRLSVPTAI QFYDLQDRLG  660
YDQPSKAIEW LINAAAGAIE KLPALDPAAF AVVPAPNEAK VNQQRGSKSG GSSTSETSKG  720
SELSLSRSDS RASASRDREA ASFTELLTGV AEHRQAWPSP PNVSAAAADC VGIAHPEKGA  780
NGMSTHAFSG LAGVKFGNAP PFGMDALAAA SASAPAGDYN LNFSMSSGHQ QQQLQPFLFG  840
HAAAAAAHPS SENHLSASAA LQLWDGFRHS GMKEKSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-24629683155Putative transcription factor PCF6
5zkt_B6e-24629683155Putative transcription factor PCF6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-32TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2