PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g07960.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 201aa    MW: 21933.9 Da    PI: 8.0163
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g07960.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1284.9e-0975118851
                                   HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                                   rr+  NReA r++R++Kka  + Lee+vk+L a N++L  +l++
  Zjn_sc00012.1.g07960.1.am.mk  75 RRALGNREAVRKYREKKKAHEAFLEEEVKKLRATNQQLLRRLQN 118
                                   89999*********************************988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-771135IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.44E-773119No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-1374136No hitNo description
PfamPF077162.9E-1374125IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.675117IPR004827Basic-leucine zipper domain
CDDcd146865.53E-1275125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDSGGADLQS QLLFSYPEMP DSFDNFLNCS HRHGCDPPST SAAMHSHSCL HAHTQVIAVG  60
GVEDDEGGAE SSGPRRALGN REAVRKYREK KKAHEAFLEE EVKKLRATNQ QLLRRLQNHA  120
ALEAEAVRLR SLLLDVRGKI GAEVAGFPFP KQCGVDSGSA VGADPPALLI ELPYVTALKV  180
PAIINFLPLF KWRVAQRKSP S
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548468e-49AK354846.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1012A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142351.11e-64uncharacterized protein LOC100274522
RefseqXP_020394445.11e-64putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394446.11e-64putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394447.11e-64putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394448.11e-64putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394449.11e-64putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ8GTS28e-41BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A3L6EEA71e-64A0A3L6EEA7_MAIZE; Basic leucine zipper 23
STRINGGRMZM2G175870_P014e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38313675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.11e-39bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]