PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g02500.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 364aa    MW: 39722 Da    PI: 10.089
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g02500.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.4e-124694155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  s+ykGV   + +grW A+I++      r +r++lg+f  ++eAa+ ++ a+++++g
  Zjn_sc00012.1.g02500.1.am.mk 46 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEDEAARSYDVAAQRFRG 94
                                  89****9888.8*********......44**********99*************98 PP

2B3932.1e-29178283190
                                   EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltk 63 
                                   f+k+ tpsdv+k++rlv+pk++ae+h                  +g + +++ l +ed sg++W+++++y+++s++yvlt+
  Zjn_sc00012.1.g02500.1.am.mk 178 FDKTVTPSDVGKLNRLVIPKQHAEKHfplhlpaaaaaavdddvvSG-ECKGVLLNFEDASGKVWRFRYSYWNSSQSYVLTR 257
                                   89***************************99998888888777522.34899***************************** PP

                                   THHHHHHHHT--TT-EEEEEE-SSSEE CS
                            B3  64 GWkeFvkangLkegDfvvFkldgrsef 90 
                                   GW++Fvk++gL +gD v F++    ++
  Zjn_sc00012.1.g02500.1.am.mk 258 GWSRFVKEKGLHAGDAVGFYRRA-AGK 283
                                   ********************533.444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1646102IPR016177DNA-binding domain
CDDcd000181.66E-2346102No hitNo description
PfamPF008471.5E-74694IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-1947102IPR001471AP2/ERF domain
PROSITE profilePS5103219.87547102IPR001471AP2/ERF domain
SMARTSM003801.1E-2547108IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-38173298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-27176287No hitNo description
SuperFamilySSF1019366.41E-29176283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.478178293IPR003340B3 DNA binding domain
PfamPF023624.1E-26178285IPR003340B3 DNA binding domain
SMARTSM010191.0E-19178293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDSTSCLLDS ASSGASTGKK APAPAPAELI RTLQRVGSGA SALPSSKYKG VVPQPNGRWG  60
AQIYERHQRV WLGTFTGEDE AARSYDVAAQ RFRGRDAVTN FRPLADSDPD DAAELRFLAA  120
RTKVEVVDML RKHTYLDELA QNRRAFAAVA PPPSPSTNGP ADSSPHPQPP SAAREHLFDK  180
TVTPSDVGKL NRLVIPKQHA EKHFPLHLPA AAAAAVDDDV VSGECKGVLL NFEDASGKVW  240
RFRYSYWNSS QSYVLTRGWS RFVKEKGLHA GDAVGFYRRA AGKQLYIDCK VRSRKTSPPG  300
PVKAVRLFGV DLLTSTPSPA SAAATLQEEM TTMAMKNKRP RDFIVTSSTP HMFFKKQCVD  360
LALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-4717529311118DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419620.0BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-161Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A2T7EAR20.0A0A2T7EAR2_9POAL; Uncharacterized protein
TrEMBLA0A3L6SXE90.0A0A3L6SXE9_PANMI; AP2/ERF and B3 domain-containing protein
STRINGSi024576m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-108related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]