PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g04110.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 305aa    MW: 32917 Da    PI: 9.3068
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g04110.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.8e-1364112155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s++kGV   + +grW A+I++      r  r++lg+f  +e Aa+a++ a+++++g
  Zjn_sc00011.1.g04110.1.sm.mk  64 SRFKGVVPQP-NGRWGAQIYE------RhERVWLGTFPDEEAAARAYDVAALRYRG 112
                                   689***9788.8*********......44*************************98 PP

2B389.13.5e-28130227894
                                   -HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                            B3   8 sdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                   +dv+k++rlv+pk++ae+h             + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD
  Zjn_sc00011.1.g04110.1.sm.mk 130 ADVGKLNRLVVPKQHAEKHfplkrapeaaAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGD 210
                                   699*****************9998887775555699********************************************* PP

                                   EEEEEE-SS.SEE..EE CS
                            B3  79 fvvFkldgr.sefelvv 94 
                                   ++vF+++   +e++l++
  Zjn_sc00011.1.g04110.1.sm.mk 211 TIVFSHSTYgEEKQLFI 227
                                   *****986656666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.4E-864112IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-1764120IPR016177DNA-binding domain
CDDcd000182.73E-1364120No hitNo description
PROSITE profilePS5103221.40465120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-2065120IPR001471AP2/ERF domain
SMARTSM003804.3E-2265126IPR001471AP2/ERF domain
PROSITE profilePS5086312.59123233IPR003340B3 DNA binding domain
SMARTSM010191.0E-16124232IPR003340B3 DNA binding domain
PfamPF023621.5E-25130228IPR003340B3 DNA binding domain
SuperFamilySSF1019366.93E-26131231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-25131217No hitNo description
Gene3DG3DSA:2.40.330.102.4E-33131235IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGVESMSSTA ADYSFSSSRS TATTESGVAQ LPVAAAPGGE ISPHDEAVTS QPSAAAAATA  60
QGSSRFKGVV PQPNGRWGAQ IYERHERVWL GTFPDEEAAA RAYDVAALRY RGRDAAANFP  120
GEGASAPELA DVGKLNRLVV PKQHAEKHFP LKRAPEAAAA ATGKGVLLNF EDGEGKVWRF  180
RYSYWNSSQS YVLTKGWSRF VREKGLRAGD TIVFSHSTYG EEKQLFIDCK KTSTTEPAVP  240
SPVEKSKETR VAVRLFGVDI AGDVCQKRGR PLEMALEQGK PFLKKQCVVP HQSPALGCPM  300
SQQTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4313024221127DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406318.11e-116AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-98Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A1D6MLR01e-115A0A1D6MLR0_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3L6FFW21e-115A0A3L6FFW2_MAIZE; AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb00702.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-46related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]