PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g11570.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 699aa    MW: 75725.5 Da    PI: 10.7344
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g11570.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-34103190182
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.....ea 75 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ +  +a se+     e+
  Zjn_sc00009.1.g11570.1.am.mk 103 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEAAAaSEAaaeatEQ 183
                                   689**************************************************************4444422222211122 PP

                           TCP  76 esssssa 82 
                                   ++++ s+
  Zjn_sc00009.1.g11570.1.am.mk 184 GEQVTST 190
                                   2222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-31105208IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615106164IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MASRFKLEED KNQLSEGLDP WSNNPTATTN TLHYLLQEKE RAQAQEQLQI YHHQGFSYLE  60
HHRRQQQNQS TGGAGCDGLS SGESTPVDAL TTAFGSGRIV RSAAGRKDRH SKVCTARGLR  120
DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKAA IEELPDRPEA AAASEAAAEA  180
TEQGEQVTST SYGFSNPGGA ITAVAGGSFV QHSVGADERN QRIPSWHASE NSTGDGRGGG  240
NGDSYMFGMQ PQSQVLPQGE PLQSSGGWAS ARTWLDPLTA IQQPSTMTGQ IGFSHLIGGA  300
GFMGFLAPAT THQRLHVPSL PRASGVAAPV SAMATASPAI VRAHWPNGIT GDRTRAHAEP  360
RGVGVSPDFH HEHTRRDPAD YGITFRFRLI SFIAPGRCSK ESCQKSPVLI DSGVRPVRGR  420
GDEIVRDGSL LELDSADWIG KQQVDFPPRF AWIQRGSACV ASSCTATRPA RFLATPKWAQ  480
YKVSRYSQEM RSGAARPPHW RDSPLSVEKA ARHEEARQVT GIRALHSSGL ALQLHRSASS  540
MANNRQLARR GAVSRSPTRQ TAAECHGSPP SEQGFAETRG FVPVPVCATA RTAGPGRQLR  600
RQSGTRNHRV SVKRFSSARA LPGPVSGGDP LHRIDASPSR RGVTSRLAQM ATSKFHIRAP  660
LFPFGLCPHM TWTNTRNGAL STDARSHYAP ARPTTVGHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-19111165155Putative transcription factor PCF6
5zkt_B6e-19111165155Putative transcription factor PCF6
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721191e-157EU972119.1 Zea mays clone 375445 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-30TCP family protein