PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g03680.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 676aa    MW: 70675.3 Da    PI: 6.8234
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g03680.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.3e-11272328155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     k+++ + g ++ +++Aa+a++ a++k++g
  Zjn_sc00009.1.g03680.1.sm.mk 272 SIYRGVTRHRWTGRYEAHLWDnSCR-RegKTRKGRQGGYDKEDKAARAYDLAALKYWG 328
                                   57*******************4444.24666444557799999*************98 PP

2AP235.82e-11360405755
                           AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zjn_sc00009.1.g03680.1.sm.mk 360 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 405
                                   899*********988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-17272338No hitNo description
SuperFamilySSF541711.57E-14272338IPR016177DNA-binding domain
PfamPF008471.8E-8272328IPR001471AP2/ERF domain
SMARTSM003804.1E-22273342IPR001471AP2/ERF domain
PROSITE profilePS5103217.253273336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-11273337IPR001471AP2/ERF domain
PRINTSPR003673.5E-6274285IPR001471AP2/ERF domain
PROSITE profilePS5103216.502352413IPR001471AP2/ERF domain
SMARTSM003802.4E-26360419IPR001471AP2/ERF domain
PfamPF008471.7E-6360405IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14361415IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-15361414IPR001471AP2/ERF domain
CDDcd000184.62E-19361415No hitNo description
PRINTSPR003673.5E-6395415IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQELPPS QTESTLMSAA ATDDVSGDMC FNIPQDWSMR GSELSALVAE  60
PKLEDFLGGI SFSGQNHKAS CNMIPSSSSA CYGSSGVISA GYQLYHQPSS ALQFADSVMV  120
ASSAGVHDGR GMLSVATANC GGAAAASSNN GGSIGLSMIK NWLRSQPAPL QPRVVDAIDG  180
AQATQGRLSL SMNMAGPQGS GMPVAGERGR APESVSTSVH GGAMVVRKED SSGGSGGAGA  240
LVAVNTPDTG GSGASAETVA TKTADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGK  300
TRKGRQGGYD KEDKAARAYD LAALKYWGPT TTTNFPVSNY EKELEEMKHM TRQEFVASLR  360
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK  420
SILESSALPI GGAAKRLKEA EAASAAAGVV GYDVGRIATQ LGDSAALAAY GAHYHAAAWP  480
TIAFQPAHAG AGAATLYHPY AQPLRGWCKQ EPDRTVIAAA HSLQELHHLN LGAGAHDFFS  540
MSGRAATHGL GSVDNASLEH STGSNSVVYS GVGDSSGGGG YMMPVNAAPT ATTTAMASHE  600
QVQGGRTQGD QDDAKQPQMA YENYLVNAEA YGCGGRTPSW STPASAQPVA AATSSNDMAG  660
VVHGGAQIFS VWNTLT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408927e-95AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682077.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A368REM70.0A0A368REM7_SETIT; Uncharacterized protein
STRINGSb03g042810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-100AP2 family protein