PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g10160.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 298aa    MW: 32210 Da    PI: 8.5616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g10160.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-184999155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  Zjn_sc00008.1.g10160.1.sm.mk 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 99
                                  79********.7*********32...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-124999IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1949108IPR016177DNA-binding domain
CDDcd000181.32E-1649107No hitNo description
SMARTSM003801.8E-3350113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2750107IPR001471AP2/ERF domain
PROSITE profilePS5103219.91550107IPR001471AP2/ERF domain
PRINTSPR003675.6E-75162IPR001471AP2/ERF domain
PRINTSPR003675.6E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELHFQVQPP AAAFQVEDYC YYYYQQEAAA AQAKPGKPRG RKKGSNNHSK FVGVRQRPSG  60
RWVAEIKDTT QKIRMWLGTF ETAEAAAKAY DEAARLLRGA DTRTNFAPRI SPNCPLAVRI  120
RGLLHHKKVK KQAKPSAAAS SSSAAGSSKK NASSSPAPAT SNSNSSGSRD SACGGSSSSL  180
SSCDDAMKRV GEVYRPDIAP LAAEEFDSWM FDSAFGQFSP LDGFPATIDS AVPAAPTLTE  240
EPRPAAAPGE MAEFERIKVE RRISASLYAI NGLQEYFDRV FDASACDSSL WDLSPLCH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404151e-123BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds.
GenBankJX4699531e-123JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958111.11e-114PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLK3ZVQ51e-120K3ZVQ5_SETIT; Uncharacterized protein
STRINGSi030686m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-26related to AP2 11