PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g00460.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 482aa    MW: 53514.9 Da    PI: 6.8328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g00460.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11317359754
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Zjn_sc00008.1.g00460.1.am.mk 317 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 359
                                   79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.55E-5303364No hitNo description
PROSITE profilePS5088815.269310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16314381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9317359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15317376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.21E-5410448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAVFCRLPFE ALDACDQQPS DPRAIRHTRT QKDNQRSRRS TLTASRDGAH SLTWRATLMS  60
SQRAASWHRI DRITDVPSTQ KDPWTMATRE SERRRKKKDT WGTTRGHVGH PLQAFVPICV  120
CLSSPLASPP LLALSQEKKP HLLFFILLEE KRGQGKQLSK RGEEMELDEQ AFLEEILSLR  180
RDAWECNAVG DFFSPATAAM DCSFQERHQP PPSVSVLPTF TASYDHQQPP PAPGFDCLSE  240
VYGAAAAFGG PNEGDYGGEM GFLDVIEPKA PLVEGAGLGV CKVEPGLQVD SGGAFSAPAA  300
PVSKKKRVEG MPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL  360
ERIKQLQEEI EQEQHEAPGV LSVFQELNPN EMVARNTPKF EVERKEGGET RVEIYCAAKP  420
GLLLSTVSTL DTLGLDIQQA VVSCFNDFGM HASCSEVQRE MISADIIKQE LFKNAGYGGG  480
CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19398RRKKKD
2304324KKRVEGMPSKNLMAERRRRKR
3318325ERRRRKRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006430.0FP100643.1 Phyllostachys edulis cDNA clone: bphyst017o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-171uncharacterized LOC100274388
TrEMBLA0A3L6S1271e-176A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2
STRINGSb10g030470.11e-166(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-47beta HLH protein 93