PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g11420.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 218aa    MW: 22698.5 Da    PI: 10.3856
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g11420.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.31.4e-34542178126
                           TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 
                                    ++ h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++    +++ssssa+ +
  Zjn_sc00007.1.g11420.1.sm.mk  54 GKDQHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSAHYQ 134
                                   4899******************************************************88888444222233333333322 PP

                           TCP  86 ssg..........................................kaaksaakskksqksaasalnlakesrakararare 124
                                   +++                                          +  +++a++   +  +a++lnl +  +a a  ra+e
  Zjn_sc00007.1.g11420.1.sm.mk 135 QQQtvlgkrpreesdatvsvaaaasafwaalptsaprsteaswgfSPLEAQATTTYVPMAQAHHLNLIAALSAGAARRAEE 215
                                   222345555666666667777776667777776666666666666444444433333444444566666666777777666 PP

                           TCP 125 rt 126
                                   +t
  Zjn_sc00007.1.g11420.1.sm.mk 216 ET 217
                                   66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3053141IPR005333Transcription factor, TCP
PROSITE profilePS5136925.74754108IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MATRDVSTAA AAAAMFHVYQ PLQVPSTAVT AAATDGALVV PATTPGKKKA SQGGKDQHSK  60
VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG SGTTPAVFVS  120
SSAPSTSSSS AHYQQQQTVL GKRPREESDA TVSVAAAASA FWAALPTSAP RSTEASWGFS  180
PLEAQATTTY VPMAQAHHLN LIAALSAGAA RRAEEETR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276991e-103KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953208.11e-85transcription factor TCP21-like
SwissprotQ9FMX23e-37TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A368PNU63e-84A0A368PNU6_SETIT; Uncharacterized protein
STRINGSb04g026970.12e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.15e-33TCP family protein