PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g10280.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 285aa    MW: 29801.9 Da    PI: 4.4534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g10280.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1874122355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Zjn_sc00007.1.g10280.1.am.mk  74 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 122
                                   9****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-1372122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-3273130IPR001471AP2/ERF domain
SMARTSM003806.1E-3673136IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2173130IPR016177DNA-binding domain
PROSITE profilePS5103223.22273130IPR001471AP2/ERF domain
PRINTSPR003671.5E-107485IPR001471AP2/ERF domain
CDDcd000182.38E-3174130No hitNo description
PRINTSPR003671.5E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSLLEAASCA RCPAVMEEER ALSPVSDASV DTCSHGSSSS FGPGSLVASP SFDESSGAAS  60
SRKRPRRELK RPAYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFDTPEMAA RAHDVAALAI  120
KGRAAHLNFP GIAHELPRAA SAAPEDVRAA AALAAAMESA APAASSDSSN GSAGCVEDDE  180
ATPSSAATVG SIDSSHGAEN DVDEEATASI AAPAACSSSS HGACYDEDEE AAPSSEHATP  240
LDSHVVDLAL FDLPDVLREF GFALPPLTPC CDDLCWDEPL LLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1474130663ATERF1
3gcc_A3e-1474130663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701801e-105EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646011.18e-96PREDICTED: ethylene-responsive transcription factor ERF043-like
TrEMBLA0A096QGD33e-93A0A096QGD3_MAIZE; Uncharacterized protein
STRINGGRMZM2G041839_P019e-93(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.19e-39ERF family protein