PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g06240.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 290aa    MW: 32185.2 Da    PI: 10.065
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g06240.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.5e-123684155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  s++kGV   + +grW A+I+d      r +r++lg+f  +  Aa+a++ a+++++g
  Zjn_sc00005.1.g06240.1.am.mk 36 SRFKGVVPQP-NGRWGAQIYD------RhTRVWLGTFPDKGAAARAYDVAARRYRG 84
                                  689***9788.8*********......44**********99*************98 PP

2B397.48.8e-31153260199
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+k+ tpsdv+k++rlv+pk++ae+h         g   +++ l +ed +g++W+++++y+ +s++yvltkGW++Fv+++g
  Zjn_sc00005.1.g06240.1.am.mk 153 FEKTVTPSDVGKLNRLVVPKHHAEKHfplkrapdAGTGGKGVLLNFEDGEGKVWRFRYSYWTSSQSYVLTKGWSRFVREKG 233
                                   99*************************999988844445899*************************************** PP

                                   --TT-EEEEEE-SS.SEE..EEEEE-S CS
                            B3  74 LkegDfvvFkldgr.sefelvvkvfrk 99 
                                   +++gD+v+F+++   +e++l++++++k
  Zjn_sc00005.1.g06240.1.am.mk 234 IRAGDTVTFYRSAYgQEKQLLIGFRKK 260
                                   **********99776888889988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-63684IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-163692IPR016177DNA-binding domain
SMARTSM003803.8E-243798IPR001471AP2/ERF domain
PROSITE profilePS5103220.1783792IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-203793IPR001471AP2/ERF domain
PRINTSPR003673.5E-73849IPR001471AP2/ERF domain
PRINTSPR003673.5E-77494IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-38149266IPR015300DNA-binding pseudobarrel domain
CDDcd100174.22E-29152245No hitNo description
SuperFamilySSF1019362.49E-30152249IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-25153261IPR003340B3 DNA binding domain
PfamPF023624.0E-28153260IPR003340B3 DNA binding domain
PROSITE profilePS5086314.269153261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MESSTMSAFQ AMDQESGAGE VAAPEQLPRQ SSSSSSRFKG VVPQPNGRWG AQIYDRHTRV  60
WLGTFPDKGA AARAYDVAAR RYRGREAVLN FPEPEECASD GELAFLLGHS KAEVVDMLRK  120
HTYADELRQG LRRGSGVGAR ARPTPAWARE QLFEKTVTPS DVGKLNRLVV PKHHAEKHFP  180
LKRAPDAGTG GKGVLLNFED GEGKVWRFRY SYWTSSQSYV LTKGWSRFVR EKGIRAGDTV  240
TFYRSAYGQE KQLLIGFRKK QETQDEAAAA AIAVESETRV VKLFGADIAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5215027111128DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818627.11e-137AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS71e-114Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A1E5VZN11e-143A0A1E5VZN1_9POAL; Putative AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb00701.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-89related to ABI3/VP1 1