PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g06230.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 586aa    MW: 63830.2 Da    PI: 10.6265
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g06230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.3e-11258303152
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                                   s++kGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++
  Zjn_sc00005.1.g06230.1.am.mk 258 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALR 303
                                   6899**9788.8*********......44*********************975 PP

2B392.92.3e-29314415190
                                   EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                                   f+k+ tpsdv+k++rlv+pk++ae+h              + +++ l +ed +g++W+++++y+++s++yvltkGW+ Fv+
  Zjn_sc00005.1.g06230.1.am.mk 314 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrspesetAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSLFVR 394
                                   89**************************99887666644445999************************************ PP

                                   HHT--TT-EEEEEE-SS.SEE CS
                            B3  71 angLkegDfvvFkldgr.sef 90 
                                   ++gL++gD++vF+++    e+
  Zjn_sc00005.1.g06230.1.am.mk 395 EKGLRAGDTIVFSHSTYgPEK 415
                                   *************87553444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-6258302IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-12258308IPR016177DNA-binding domain
SMARTSM003804.9E-12259317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-14259303IPR001471AP2/ERF domain
PROSITE profilePS5103216.753259303IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-37310428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-29311423IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-28312409No hitNo description
PfamPF023622.2E-26314410IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197314425IPR003340B3 DNA binding domain
SMARTSM010191.8E-21314424IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MLARGRSKLP TPARGRGIHS LPPSSLSHSV RHRLARSGAR QVAPNHPPVP IHEDHDPSIH  60
GAWGTDLVAS TAFIGVNRPP SCFLRRKKKR SGRKRRNGST SSPTSRPCVC AAAGTDKHQK  120
IAATRQKRRQ RVLGPASFPG ELNLLSLSLS LFCPCTRRSE RKVKLLLAHT PRSHKEKPNE  180
EGERASELQL TTSMGVESMS PTAADYYSSS RSSGASTATT ESGVAQLPVA AAPGAESGDV  240
SPADEAVTSQ AAVAQGSSRF KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA  300
ALRPTPAWAR APLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLKRSPESET AAATGKGVLL  360
NFEDGEGKVW RFRYSYWNSS QSYVLTKGWS LFVREKGLRA GDTIVFSHST YGPEKQLFID  420
CKKTPTTTEP VAVPSTPLEK PKEARVAVRL FGVDIAGDGC QKRERPLEMA LEQEQGFLKK  480
HCLHFTTRID RCATCMHYAA AASINLRENE CQVHCTDSGH RRRSFAGLAR QSTRRPVAGH  540
APHTVSDPAR RQSVPSGQVA GSTFHSSQPP HAFPGPRELA NEPSCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4631343613129DNA-binding protein RAV1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489RRKKKR
28490RRKKKRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958121e-102FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968351e-102FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-52related to ABI3/VP1 2