PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g03230.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 540aa    MW: 58673.2 Da    PI: 8.1235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g03230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.3e-14337382555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h + Er+RR+++N++f+ L+++lP+       K +K +iL +A eYI+sL+
  Zjn_sc00005.1.g03230.1.am.mk 337 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILIRAREYIRSLE 382
                                   8899********************95.....4999**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.98E-14334382No hitNo description
SuperFamilySSF474598.24E-16335399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17336399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-11337382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGARNPLGSD GKMLLLDGDV RPPGTATGLV VATPIFCPPR ISIDASSGVN RPDTGRRVAL  60
VGWLQRGIDP RHVGDMNWCS PVRWIRVFLS LQQRWIDRSI AMDSSWFHGY ATANAAGNNG  120
FMCGYAASCT PAELQHEEEE EEMLISSQIH HHLNQISRHM NMDDEVVYDG VLDIQEHPTM  180
VDDLLDPNHA TSFPSSSSSS SLSLRSGSFS CSPDSSAQVF GAPAPAASGH YPEVSSHVPL  240
PPAAPYTNVH VSTAPLAATP PAAGKQASAF KSYAQHLGPR RQPTKPGACG QKMFKTAMSV  300
LSRMHMAASA RYNQQYYYQQ ASAEAVATPP SVNQLQHMIS ERKRREKLND SFQALKTVLP  360
PGSKKDKTSI LIRAREYIRS LESKASELEE KNKELESRLT GHRGSQAGAD DADADKKVQI  420
EITRAAKECW AVEPRDLCTL KIVVRSRCNM TDVVLRTLQC LKDQAGDDVN LVSMNTSGSS  480
AGPPQTSSSP RAVLTMQIKS SRGAKWEEQP VKDAVAKVVA DAALTPPSAA VDETAPRRRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERKRRE
2341346RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.11e-137putative transcription factor bHLH041
TrEMBLA0A2T7DSE31e-136A0A2T7DSE3_9POAL; Uncharacterized protein
STRINGSi001328m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-20bHLH family protein